GACT: Genome Build and Allele Definition Prediction and Conversion Tool

Choose File	Example Map Download Example This is a b36 A/B file for the Human Omni 1M Quad 1(0-B)
Old Genome Build b36 Human Genome Build b36 b37 Human Genome Build b37 Unknown GACT will predict your genome build(>100 SNPs required)	New Genome Build b36 Human Genome Build b36 b37 Human Genome Build b37
Old Allele Format A/B Illumina A/B Format FWD FWD Format PLUS PLUS Format TOP TOP Format Unknown GACT will predict your allele format(a new version will be online soon)	New Allele Format A/B Illumina A/B Format FWD FWD Format PLUS PLUS Format TOP TOP Format
Microarray More microarrays are actively being added. Currently conversion to/from PLUS only works with Illumina Human Omni 1M Quad version 1(0-B). Illumina Human Omni 1M Quad version 1(0-B) Illumina Human Omni 1M Quad version 1(0-H) Illumina CNV370 version 1C Illumina Human Hap 550 version 3B Illumina HumanCytoSNP-12 version 1(0-D) (...pending) Illumina Human Hap 1M version 3 (...pending) Illumina Human Hap 1M version 1 (...pending)

We hope you find our tool useful! Please use the following reference: "Sulovari, A., Li, D. GACT: a Genome build and Allele definition Conversion Tool for SNP imputation and meta-analysis in genetic association studies of human diseases (BMC Genomics 2014, 15:610; doi:10.1186/1471-2164-15-610)"

GACT: Genome Build and Allele Definition Conversion Tool